DNA minor-groove alkylation; seco-DUBA activated to DUBA causing irreversible DNA alkylation
Released catabolite
seco-DUBA, activated to DUBA (duocarmycin)
Mechanistic subtype
DNA-alkylator
Stereochem / salt
-
Bystander
Yes
PAMPA rank
-
MW
527 Da
XLogP3
5.3
logD₇.₄
-
TPSA
107 Ų
pKa
-
Charge pH 7.4
0
H-bond donors
3
H-bond acceptors
5
IC50 (HCEC)
-
Formula
C29H23ClN4O4
PubChem CID
46240929
ADCdb payload
PAY0SOSMQ
Bioactivity note
Free DUBA payload is highly potent (ADCdb-reported cell IC50 ~0.09 nM SK-BR-3 / SW620, 0.43 nM SK-OV-3). BYON3521 ADC showed good potency and full efficacy in MET-amplified/high-MET cell lines (publication IC50 ~1.5-18.2 ng/mL across MET-expressing lines) with target- and bystand
AACR 2023 Abstract CT185 (Cancer Res 2023;83(8_suppl):CT185); NCT05323045
Aliases & development codes
BYON3521; BYON 3521
Notes
c-MET (MET/HGFR) targeting ADC from Byondis (originated by Syntarga). Humanized cysteine-engineered IgG1 (clone mAb3b / SYD2884) conjugated site-specifically via engineered cysteine (HC-41C, Kabat) to the cleavable valine-citrulline-seco-DUBA (vc-seco-DUBA / SYD980; ADCdb linker "Mc-Val-Cit-PABC", LIN0SQEDQ) duocarmycin linker-drug, DAR ~1.8 (ADCdb lists 2). Payload seco-DUBA is a DNA-alkylating duocarmycin activated to DUBA, with bystander activity. Clinical evidence is the AACR 2023 dose-escalation abstract CT185 (FIH Phase 1 NCT05323045, n=8 as of data cutoff Jan 1, 2023; doses 0.8/1.6/3.2/4.8 mg/kg IV Q3W). No Grade 3/4 TRAEs and no DLTs at cutoff; most common related AEs were decreased appetite/weight, fatigue, abdominal pain, back pain, vomiting and chills. OCULAR: explicit-zero - the abstract states "Typical ADC associated adverse events as keratitis and pneumonitis have not been observed so far," consistent with the triage. "History or presence of keratitis" is a trial exclusion criterion (ctv.veeva.com / NCT05323045). The ClinicalTrials.gov registry summary now lists the study as Completed with 31 patients enrolled, but no primary publication beyond the n=8 CT185 abstract was retrievable, so dosing/toxicity reflect the Jan 2023 cutoff. NOTE: duocarmycin/seco-DUBA is the same payload class as trastuzumab duocarmazine (SYD985), which is ocular-prone; the preclinical paper (Mol Cancer Ther 2023, PMC10233350) characterizes BYON3521's eye toxicity as "modest" in the nonclinical (cynomolgus) setting only - that is preclinical, not clinical. A secondary/unverified suggestion that eye disorders may emerge at higher doses (>4.8 mg/kg) in later data could not be confirmed in any primary source. No RP2D/MTD was defined at the data cutoff (escalation ongoing), so dosing.rp2d fields left blank. Payload physchem reported at the seco-DUBA/DUBA duocarmycin level (Tier C; exact computed PubChem values for the specific seco-DUBA structure not separately retrieved, so left blank where uncertain rather than imputed).